Satheesan A, Sharma S, Chatterjee M, Basu A “Interplay Between the Gut–Microbiota–Brain Axis and the Immune System in Viral Neuroinvasion and CNS Pathogenesis” Compr Physiol (2026)

Roy K, Priyadarsani A, Basu A “From sensing to shaping: microglial responses in the pathogenesis of viral encephalitis” Neurosci Biobehav Rev (2026)

Sharma S, Satheesan A, Majumdar A, Mukherjee S, Basu A “PARP-16 regulates the PERK and IRE-1alpha Mediated Unfolded Protein Response in Japanese Encephalitis Virus-Infected Neural Stem Progenitor Cells” Mol Neurobiol (2025)

Tripathi S, Sengar S, Basu A, Sharma V “LncRNA JINR1 regulates miR-216b-5p GRP78 and miR-1-3p DDX5 axis to promote JEV infection and cell death” J Virol (2025)

Roy K, Basu R, Basu A “Climate change and neurotropic vector-borne viruses: addressing emerging threats through a One Health approach” mBio (2025)

Bhaskar M, Satheesan A, Basu A “Low-density Lipoprotein Receptor is an important host factor in flaviviral entry and replication in neurons” Biochem Biophys Res Commun (2024)

Majumdar A, Siva Venkatesh IP, Swarup V, Basu A “Short-chain fatty acids abrogate Japanese encephalitis virus-induced inflammation in microglial cells via miR-200a-3p ZBTB20 IK beta alpha axis” mBio (2024)

Sharma S, Majumdar A, Basu A “Regulation of Onecut2 by miR-9-5p in Japanese encephalitis virus infected neural stem/progenitor cells” Microbiology Spectrum (2024)

Siva Venkatesh IP, Majumdar A, Basu A “Prophylactic Administration of Gut Microbiome Metabolites Abrogated Microglial Activation and Subsequent Neuroinflammation in an Experimental Model of Japanese Encephalitis” ACS Chem Neurosci (2024)

Majumdar A, Siva Venkatesh IP, Basu A “Short Chain Fatty Acids in the Microbiota Gut Brain Axis Role in Neurodegenerative Disorders and Viral Infections” ACS Chemical Neuroscience (2023)

Mohapatra S, Chakraborty T, Basu A “Japanese Encephalitis virus infection in astrocytes modulate microglial function: Correlation with inflammation and oxidative stress” Cytokine (2023)

Mohapatra S, Tripathi S, Sharma V, Basu A “Regulation of microglia-mediated inflammation by host lncRNA Gm20559 upon flaviviral infection” Cytokine (2023)

Satheesan A, Sharma S, Basu A “Sodium Butyrate Induced Neural Stem/Progenitor Cell Death in an Experimental Model of Japanese Encephalitis” Metabolic Brain Disease (2023)

Tripathi S, Sengar S, Shree B, Mohapatra S, Basu A, Sharma V “An RBM10 and NF-KB interacting host lncRNA promotes JEV replication and neuronal cell death” J Virol (2023)

Chakraborty S, Sen E, Basu A “Pyruvate dehydrogenase kinase 1 promotes neuronal apoptosis upon Japanese encephalitis virus infection” IBRO Neuroscience Reports (2022)

Majumdar A, Basu A “Involvement of host micorRNAs in flavivirus-induced neuropathology: an update” Journal of Biosciences (2022)

Mishra R, Kumawat KL, Basu A, Banerjea AC “Japanese Encephalitis Virus infection increases USP42 to stabilize TRIM21 and OAS1 for neuroinflammatory and anti-viral response in human microglia” Virology (2022)

N Soni, A Tripathi, S Mukherjee, S Gupta, S Mohanty, Basu A, Banerjee A “Bone marrow derived extracellular vesicles modulate the abundance of infiltrating immune cells in the brain and exert an antiviral effect against the Japanese encephalitis virus” FASEB BioAdvances (2022)

Venkatesh IPS, Bhaskar M, Basu A “Japanese encephalitis viral infection modulates proinflammatory cyto/chemokine profile in primary astrocyte and cell line of astrocytic origin” Metabolic brain disease (2022)

Bhaskar M, Mukherjee S, Basu A “Involvement of RIG-I Pathway in Neurotropic Virus-Induced Acute Flaccid Paralysis and Subsequent Spinal Motor Neuron Death” mBio (2021)

Chakraborty S, Basu A “Catching hold of COVID-19-related encephalitis by tracking ANGPTL4 signature in blood-An Editorial Highlight for Endothelial cell biomarkers in critically ill COVID-19-patients with encephalitis-” J Neurochem (2021)

Sehrawat S, Khasa R, Deb A, Prajapat SK, Mallick S, Basu A, Surjit M, Kalia M, Vrati S “Valosin-containing protein/p97 plays critical roles in the Japanese encephalitis virus life cycle” J Virol (2021)

Tripathi S, B Shree, Mohapatra S, Swati, Basu A, and Sharma V “The Expanding Regulatory Mechanisms and Cellular Functions of Long Non-coding RNAs (lncRNAs) in Neuroinflammation” Molecular Neurobiology (2021)

Vedagiri D, Gupta D, Mishra A, Krishna G, Bhaskar M, Sah V, Basu A, Nayak D, Kalia M, Valiya Veettil M, Harshan KH “Retinoic Acid-Inducible Gene I-Like Receptors Activate Snail To Limit RNA Viral Infections” J Virol (2021)

Chakraborty S. and Basu A. “The COVID-19 pandemic: catching up with the cataclysm” F1000Res (2020)

Wani M. A., Mukherjee S., Mallick S., Akbar I. and Basu A. “Atorvastatin ameliorates viral burden and neural stem/ progenitor cell (NSPC) death in an experimental model of Japanese encephalitis.” J Biosci (2020)

Agrawal M., Rastogi M., Dogra S., Pandey N., Basu A. and Singh S. K. “Chandipura Virus Changes Cellular Mirnome in Human Microglial Cells” J Med Virol (2019)

Hazra B, Chakraborty S, Bhaskar M, Mukherjee S, Mahadevan A, Basu A “miR-301a Regulates Inflammatory Response to Japanese Encephalitis Virus Infection via Suppression of NKRF Activity” Journal of Immunology (2019)

Mukherjee S, Akbar I, Kumari B, Vrati S, Basu A, Banerjee A “Japanese Encephalitis Virus induced let 7a or 7b interacted with the NOTCH TLR7 pathway in microglia and facilitated neuronal death via caspase activation” Journal of Neurochemistry (2019)

Ojha A., Bhasym A., Mukherjee S., Annarapu G. K., Bhakuni T., Akbar I., Seth T., Vikram N. K., Vrati S., Basu A., Bhattacharyya S. and Guchhait P “Platelet Factor 4 Promotes Rapid Replication and Propagation of Dengue and Japanese Encephalitis Viruses” EBioMedicine (2019)

Dutta K. and Basu A. “Overview on Japanese Encephalitis in South and Southeast Asia” Neglected Tropical Disease-South Asia (2018)

Mukherjee S, Sengupta N, Chaudhuri A, Akbar I, Singh N, Chakraborty S, Suryawanshi AR, Bhattacharyya A, Basu A “PLVAP and GKN3 Are Two Critical Host Cell Receptors Which Facilitate Japanese Encephalitis Virus Entry Into Neurons” Scientific reports (2018)

Ojha A, Bhasym A, Mukherjee S, Annaparu GK, Bhakuni T, Akbar I, Vikram NK, Vrati S, Basu A, Bhattacharya S, Guchhait P “Platelet factor 4 promotes rapid replication and propagation of Dengue and Japanese encephalitis viruses” EBioMedicine (2018)

Swaroop S, Mahadevan A, Shankar SK, Adlakha YK, Basu A “HSP60 critically regulates endogenous IL-1 beta production in activated microglia by stimulating NLRP3 inflammasome pathway” Journal of Neuroinflammation (2018)

Verma AK, Waghmare TS, Jachak GR, Philkhana SC, Reddy DS, Basu A “Nitrosporeusine analogue ameliorates Chandipura virus induced inflammatory response in CNS via NF-Kappa b inactivation in microglia” Plos Neglected Tropical disease (2018)

Verma AK, Ghosh S, Basu A “Chandipura Virus Induced Neuronal Apoptosis via Calcium Signaling Mediated Oxidative Stress” Frontiers in Microbiology (2018)

Basu A. and Dutta K. “Recent Advances in Japanese Encephalitis” F1000Res (2017)

Ghosh S. and Basu A “Neuropathogenesis by Chandipura Virus: An Acute Encephalitis Syndrome in India” Natl Med J India (2017)

Hazra B, Kumawat KL, Basu A “The host microRNA miR-301a blocks the IRF1-mediated neuronal innate immune response to Japanese encephalitis virus infection” Sci Signal (2017)

Hazra B., Chakraborty S. and Basu A. “Mir-301a Mediated Immune Evasion by Japanese Encephalitis Virus” Oncotarget (2017)

Mahanti S., Majhi A., Adhikary R., Ghosh S., Basu A. and Bishayi B. “Exogenous Interleukin-10 and Ciprofloxacin Treatment Reduces Inflammation and Helps to Improve Cognitive Behavior in Acute and Chronic Restrain Stressed Mice Infected with Eschericia Coli” Indian Journal of Biochemistry & Biophysics (2017)

Nain M, Mukherjee S, Karmakar SP, Paton AW, Paton JC, Abdin MZ, Basu A, Kalia M, Vrati S. J Virol “GRP78 is an important host-factor for Japanese encephalitis virus entry and replication in mammalian cells” J Virology (2017)

Philkhana SC, Verma A, Jachak GR, Hazra B, Basu A “Identification of new anti-inflammatory agents based on nitrosporeusine natural products of marine origin.” Eur Journ of Med Chemistry (2017)

S. Mukherjee, N Singh, N. Sengupta, M. Fatima, P. Seth, A. Mahadevan, SK Shankar, A. Bhattacharyya, A. Basu “Japanese encephalitis virus induces human neural stem or progenitor cell death by elevating GRP78, PHB and hnRNPC through ER stress” Cell Death Dis (2017)

Verma A., Tripathi P., Rai N., Basu A., Jain A., Atam V., Agrarwal M. and Kumar R. “Long-Term Outcomes and Socioeconomic Impact of Japanese Encephalitis and Acute Encephalitis Syndrome in Uttar Pradesh, India” International Journal of Infection (2017)

Dutta K., Ghosh S. and Basu A “Infections and Inflammation in the Brain and Spinal Cord: A Dangerous Liaison” Inflammation: The Common Link in Brain Pathologies (2016)

Ghosh S. and Basu A “Acute Encephalitis Syndrome in India: The Changing Scenario” Ann Neurosci (2016)

Ghosh S., Mukherjee S., Sengupta N., Roy A., Dey D., Chakraborty S., Chattopadhyay D., Banerjee A. and Basu A “Network Analysis Reveals Common Host Protein/S Modulating Pathogenesis of Neurotropic Viruses” Sci Rep (2016)

Kumar R, Basu A, Sinha S, Das M, Tripathi P, Jain A, Kumar C, Atam V, Khan S, Singh AS “Role of oral Minocycline in acute encephalitis syndrome in India - a randomized controlled trial” BMC Infect Dis (2016)

Kumar R., Basu A., Sinha S., Das M., Tripathi P., Jain A., Kumar C., Atam V., Khan S. and Singh A. S. “Role of Oral Minocycline in Acute Encephalitis Syndrome in India - a Randomized Controlled Trial” BMC Infect Dis (2016)

Kumari B, Jain P, Das S, Ghosal S, Hazra B, Trivedi AC, Basu A, Chakrabarti J, Vrati S, Banerjee A “Dynamic changes in global microRNAome and transcriptome reveal complex miRNA-mRNA regulated host response to Japanese Encephalitis Virus in microglial cells” Scientific Reports (2016)

Mall P., Verma A., Basu A., Chandrakanta Khan S. F., Jain A., Tripathi P., Jain S., Parihar A. and Kumar R. “Clinical and Magnetic Resonance Imaging Features in Survivors of Acute Encephalitis Syndrome in Uttar Pradesh, India” Current Pediatric Research (2016)

Prashanth R., Dutta Roy S., Mandal P. K., Ghosh S. and Basu A “High-Accuracy Detection of Early Parkinsons Disease through Multimodal Features and Machine Learning” Int J Med Inform (2016)

Sharma N., Kumawat K. L., Rastogi M., Basu A. and Singh S. K. “Japanese Encephalitis Virus Exploits the Microrna-432 to Regulate the Expression of Suppressor of Cytokine Signaling (Socs) 5.” Sci Rep (2016)

Swaroop S, Sengupta N, Suryawanshi AR, Adlakha YK, Basu A “HSP60 plays a regulatory role in IL-1 beta-induced microglial inflammation via TLR4-p38 MAPK axis” J. Neuroinflammation (2016)

Verma A, Ghosh S, Pradhan S, Basu A “Microglial activation induces neuronal death in Chandipura virus infection” Scientific Reports (2016)

Ghosh S, Mukherjee S, Basu A. “Chandipura Virus Perturbs Cholesterol Homeostasis Leading to Neuronal Apoptosis.” J Neurochem (2015)

Handore KL, Jadhav PD, Hazra B, Basu A, Reddy DS “Total Syntheses and Biological Evaluation of Botryosphaeridione, Pleodendione, 4-epi-Periconianone B, and Analogues.” ACS Medicinal Chemistry Letters (2015)

Mahanti S, Majhi A, Kundu K, Basu A, Bishayi B “Systemic Staphylococcus aureus infection in restraint stressed mice modulates impaired immune response resulting in improved behavioral activities.” J. Neuroimmunology (2015)

Mukherjee S, Ghosh S, Nazmi A,Basu A “RIG-I knockdown impedes neurogenesis in a murine model of Japanese encephalitis.” Cell Biol. Int (2015)

Sengupta N, Mukherjee S, Tripathi P, Kumar R, Suryavanshi A, Basu A “Cerebrospinal Fluid Biomarkers of Japanese Encephalitis.” F1000Res (2015)

Sharma N, Verma R, Kumawat KL, Basu A, Singh SK. “miR-146a suppresses cellular immune response during Japanese encephalitis virus JaOArS982 strain infection in human microglial cells.” J Neuroinflammation (2015)

Suhas V. V., Ghosh S., Narain P., Basu A. and Gomes J. “HSP70 mediates survival in apoptotic cells-Boolean network prediction and experimental validation” Front. Cell Neurosci (2015)

Kumawat KL, Kaushik DK, Goswami P, Basu A “Acute exposure to lead acetate activates microglia and induces subsequent bystander neuronal death via caspase-3 activation” Neurotoxicology (2014)

Nazmi A, Mukherjee S, Kundu K, Dutta K, Mahadevan A, Shankar SK, Basu A. “TLR7 is a key regulator of innate immunity against Japanese Encephalitis Virus infection.” Neurobiol Dis (2014)

Sengupta N, Ghosh S, Vasaikar SV, Gomes J, Basu A (2014) “Modulation of Neuronal Proteome Profile in Response to Japanese Encephalitis Virus Infection.” Plos ONE (2014)

Thounaojam MC, Kaushik DK, Kundu K, Basu A. “microRNA-29b Modulates Japanese Encephalitis Virus-Induced Microglia Activation by Targeting Tumor Necrosis Factor Alpha-induced Protein 3 (TNFAIP3).” J Neurochem (2014)

Thounaojam MC1, Kundu K, Kaushik DK, Swaroop S, Mahadevan A, Shankar SK, Basu A. “MicroRNA-155 Regulates Japanese Encephalitis Virus Induced Inflammatory Response by Targeting src Homology 2-Containing Inositol Phosphatase-1 (SHIP1).” J Virol (2014)

Ariff IM, Thounaojam MC, Das S, Basu. “Japanese Encephalitis Virus Infection Alters Both Neuronal and Astrocytic Differentiation of Neural Stem or Progenitor Cells.” J. Neuroimmune Pharmacol (2013)

D. Adhya, K. Dutta, K. Kundu, A. Basu “Histone deacetylase inhibition by Japanese encephalitis virus in monocyte ormacrophages, A novel viral immune evasion strategy.” Immunobiol (2013)

Ghosh S, Dutta K, Basu A. “Chandipura Virus induces Neuronal Death through Fas-mediated Extrinsic Apoptotic Pathway.” J Virol (2013)

Kaushik DK, Thounaojam MC, Kumawat KL, Gupta M, Basu A. “Interleukin-1beta orchestrates underlying inflammatory responses in microglia via Kruppel-like factor 4.” J Neurochem (2013)

Kundu K, Dutta K, Nazmi A, Basu A “Japanese encephalitis virus infection modulates the expression of suppressors of cytokine signaling (SOCS) in macrophages, implications for the hosts innate immune response.” Cell Immunol (2013)

S Mahanti, A Majhi, S Chongdar, K Kundu, K Dutta, A Basu, B Bishayi “Increased resistance of immobilized-stressed mice to infection: Correlation with behavioral alterations.” Brain Behav Immun (2013)

Thounaojam MC, Kaushik DK, Kundu K, Basu A “microRNA-29b Modulates Japanese Encephalitis Virus-Induced Microglia Activation by Targeting Tumor Necrosis Factor Alpha-induced Protein 3 (TNFAIP3).” J Neurochem (2013)

A. Nazmi, R. Mukhopadhyay, K. Dutta and A. Basu. “STING mediates neuronal innate immune response following Japanese encephalitis virus infection.” Scientific Reports (2012)

D.K. Kaushik, M. Gupta, K.L. Kumawat, A Basu. “NLRP3 Inflammasome: Key Mediator of Neuroinflammation in Murine Japanese Encephalitis.” Plos ONE (2012)

D.K. Kaushik, R. Mukhopadhyay, M. Gupta, K.L. Kumawat, A. Basu. “Therapeutic targeting of Kruppel like factor 4 abrogates microglial activation.” J Neuroinflammation (2012)

A Nazmi, K. Dutta and A. Basu “RIG-I mediates innate immune response in mouse neurons following Japanese encephalitis virus infection” PLoS One (2011)

A. Nazmi, K. Dutta, S. Das and A. Basu “Japanese encephalitis virus infected macrophages induces neuronal death” J Neuroimmune Pharmacol (2011)

K. Dutta, A. Nazmi, and A. Basu “Chemotherapy in Japanese encephalitis, Are we there yet” Infect Disord Drug Targets (2011)

S. Das, K. Dutta, K.L. Kumawat, A. Ghoshal, D. Adhya and A. Basu. “Abrogated inflammatory response promotes neurogenesis in a murine model of Japanese encephalitis.” Plos ONE (2011)

A. Nazmi, K. Dutta and A. Basu “Antiviral and neuroprotective role of octaguanidinium dendrimer-conjugated morpholino oligomers in Japanese encephalitis.” PLoS Negl Trop Dis (2010)

D. Adhya and A. Basu “Epigenetic modulation of host New insights into immune evasion by viruses” J Biosci (2010)

D.K. Kaushik, M. Gupta, S. Das and A. Basu. “Kruppel-like factor 4, a novel transcription factor regulates microglial activation and subsequent neuroinflammation.” J Neuroinflammation (2010)

K. Dutta, D. Ghosh, A. Nazmi, K.L. Kumawat, and A. Basu. “A common carcinogen benzo[a]pyrene causes neuronal death in mouse via microglial activation.” Plos ONE (2010)

K. Dutta, K.L. Kumawat, A. Nazmi, M.K. Mishra, and A. Basu “Minocycline differentially modulates viral infection and persistence in an experimental model of Japanese encephalitis.” J Neuroimmune Pharmacol (2010)

K. Dutta, M.K. Mishra, A. Nazmi, K.L. Kumawat and A. Basu “Minocycline differentially modulates macrophage mediated peripheral immune response following Japanese encephalitis virus infection.” Immunobiol (2010)

S Das, S Chakraborty, and A Basu “Critical role of lipid rafts in virus entry and activation of Phosphoinositide 3 Kinase-Akt signaling during early stages of Japanese Encephalitis Virus infection in neural stem or progenitor cells.” J Neurochem (2010)

D. Ghosh, M.K. Mishra, S. Das, D.K. Kaushik and A. Basu “Tobacco carcinogen induces microglial activation and subsequent neuronal damage.” J Neurochem (2009)

K Dutta, D Ghosh, and A Basu “Curcumin protects neuronal cells from Japanese encephalitis virus-mediated cell death and also inhibits infective viral particle formation by dysregulation of ubiquitin-proteasome system.” J Neuroimmune Pharmacol (2009)

M.K. Mishra, D. Ghosh, R. Duseja, and A. Basu. “Antioxidant potential of minocycline in Japanese encephalitis virus infection in murine neuroblastoma cells: correlation with membrane fluidity and cell death.” Neurochem Int (2009)

S. Das, D. Ghosh, and A. Basu. “Japanese encephalitis virus induce immuno-competency in neural stem/progenitor cells.” Plos ONE (2009)

M.K. Mishra and A. Basu. “Minocycline neuroprotects, reduces microglial activation, inhibits caspase-3 induction, and viral replication following Japanese encephalitis.” J Neurochem (2008)

S. Das and A. Basu. “Japanese encephalitis virus infects neural progenitor cells and decreases their proliferation.” J Neurochem (2008)

A. Ghoshal, S. Das, S. Ghosh, M.K. Mishra, V. Sharma, P. Koli, E. Sen and A. Basu. “Proinflammatory mediators released by activated microglia induces neuronal death in Japanese encephalitis.” Glia (2007)

V. Swarup, J. Ghosh, R. Duseja, S. Ghosh, and A. Basu “Japanese encephalitis virus infection decrease endogenous IL-10 production correlation with microglial activation and neuronal death.” Neurosci Lett (2007)

V. Swarup, J. Ghosh, S. Ghosh, A. Saxena, and A. Basu “Anti-viral and anti inflammatory effect of rosmarinic acid in an experimental murine model of Japanese encephalitis.” Antimicrob Agents Chemother (2007)

V. Swarup, S. Das, S. Ghosh and A. Basu “Tumor necrosis factor receptor-1 induced neuronal death by tradd contributes to the pathogenesis of japanese encephalitis.” J Neurochem (2007)